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update.sh not returning redhat (satellite) repo updates via inputs.conf but is interactively

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I am encountering an error I haven't seen before. In our environment we have Splunk_TA_nix and have enabled update.sh (sourcetype Unix:Update) it works going into the Splunk but the output is incorrect. Example: Output in Splunk: Thu May 19 14:57:31 AEST 2016 extras=0 base=0 addons=0 updates=0 But the output when ran on the command line: Thu May 19 13:28:30 AEST 2016 extras=0 @devl-rhel-x86_64-server-6=1 base=0 addons=0 production-rhel-x86_64-server-6=211 updates=0 And yes the forwarders are running as root. Has anyone seen this issue before? Suggestions to resolve? Thanks Cam.

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