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How to troubleshoot why Splunk is reindexing log file data with some fields messed up?

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Hi, I have Splunk Universal Forwarder running on my BRO-IDS sensor machine and monitoring a log directory where Bro rotates the files every hour and the rotated files are kept elsewhere in a other dir in gz format. The rotation happens at the end of every hour and the log file name never changes (i.e, conn.log, http.log etc will remain conn.log, http.log in the directory that Splunk is monitoring, but will have new data for that hour). I was happily indexing some of my Bro log files thinking that Splunk will know whenever the log files will get rotated and starts reading the new file (with the same name) from the beginning when it will calculate checksum for that file. When I searched the events in my search head corresponding to the Bro logs, every entry had 12 duplicated indexed events with weird time stamps (look at the unix ts in event) in the events like : **14689504660** C8129F2JOKFPessVv4 119.255.39.66 1117 xxx.xx.xxx.xxx 14330 tcp - 3.015041 0 0 S0 F T 0 S 2 104 0 0 (empty) **14689504660** C8129F2JOKFPessVv4 119.255.39.66 1117 xxx.xx.xxx.xxx 14330 tcp - 3.015041 0 0 S0 F T 0 S 2 104 0 0 (empty) **14689504660** C8129F2JOKFPessVv4 119.255.39.66 1117 xxx.xx.xxx.xxx 14330 tcp - 3.015041 0 0 S0 F T 0 S 2 104 0 0 (empty) **14689504660** C8129F2JOKFPessVv4 119.255.39.66 1117 xxx.xx.xxx.xxx 14330 tcp - 3.015041 0 0 S0 F T 0 S 2 104 0 0 (empty) ....... ....... ..... So on up to 12 events This exceeded our per day license usage (ofc ourse if Splunk is re-indexing same file, that is ~12GB, 12 times, it is going to exceed the license). Hence I turned off the monitoring of my Bro logs to trouble shoot the issue, and couldn't figure out why Splunk is doing this. Also looked into the Splunkd logs on forwarder which looked kind of normal (log files got read every hour): $ less splunkd.log | grep '/mnt/ssd/bro/spool/manager/conn.log' | grep '07-19-2016' | more 07-19-2016 00:16:42.532 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 01:14:21.794 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 01:14:21.794 -0400 WARN TailReader - Enqueing a very large file=/mnt/ssd/bro/spool/manager/conn.log in the batch reader, with bytes_to_read=359045778, reading of other large files could be delayed 07-19-2016 02:39:12.090 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 02:39:12.115 -0400 WARN TailReader - Enqueing a very large file=/mnt/ssd/bro/spool/manager/conn.log in the batch reader, with bytes_to_read=479827021, reading of other large files could be delayed 07-19-2016 03:00:15.088 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 04:00:15.306 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 05:00:24.703 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 06:00:15.284 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 06:56:11.571 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 07:02:49.600 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 08:54:35.995 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 08:54:36.191 -0400 INFO TailReader - Will retry path="/mnt/ssd/bro/spool/manager/conn.log" after deferring for 10000ms, initCRC changed after being queued (before=0xcb0d087403c5153a, after=0x33c7d5dc84662354). File growth rate must be higher than indexing or forwarding rate. 07-19-2016 08:54:46.193 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 08:54:46.213 -0400 WARN TailReader - Enqueing a very large file=/mnt/ssd/bro/spool/manager/conn.log in the batch reader, with bytes_to_read=1013010522, reading of other large files could be de layed 07-19-2016 09:10:36.385 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 09:10:36.406 -0400 WARN TailReader - Enqueing a very large file=/mnt/ssd/bro/spool/manager/conn.log in the batch reader, with bytes_to_read=215379268, reading of other large files could be del ayed 07-19-2016 10:00:18.237 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. 07-19-2016 11:00:14.982 -0400 INFO WatchedFile - Will begin reading at offset=0 for file='/mnt/ssd/bro/spool/manager/conn.log'. Not sure what is causing the re-indexing (approx 12 times) of the same file in Splunk. Any help would be greatly appreciated. Thanks.

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