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Override hostname to FQDN in etc/system/local/inputs.conf on Windows Forwarder v6.5

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Hello, I need to set Windows forwarders to use the FQDN as the hostname across all inputs, as I have duplicate hostnames in my environment. I've tried changing everything in a Splunk deployment app, but the only thing that seems to work is if I manually correct the entry in C:\Program Files\SplunkUniversalForwarder\etc\system\local\inputs.conf from hostname to FQDN. From: [default] host = svr-vCenter To: [default] host = svr-vCenter.domain.local The changes that I've made in the deployment app have meant that the splunkd.log reports the name correctly: 10-08-2016 16:46:59.063 +0100 INFO ServerConfig - Host name option is "fullyqualifiedname". 10-08-2016 16:46:59.063 +0100 INFO ServerConfig - My hostname is "svr-vCenter.domain.local". But anything sent to the Splunk indexer shows up as the shortname and the FQDN gets ignored unless I change the file above. Is there any way I can automatically set this during install or afterwards in Splunk other than manually changing the contents of the file? What am I missing as this is driving me nuts! Thanks, Andy

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